Hi,
The default parameters are the same for the standalone and rgbd_mapping.launch file, so the results should be similar. The difference could come from the message synchronization in ROS (the callback receiving the images). You can try with different queue_size (default 10). Another thing to verify is if the RGB and depth images are correctly registered together by the node publishing the images.
$ roslaunch openni2_launch openni2.launch depth_registration:=true
then check if you have the same problem as
this.
cheers